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Draft genome sequence of calcium-dependent Novosphingobium sp. strain TCA1, isolated from a hot spring containing a high concentration of calcium ions
https://repo.qst.go.jp/records/79813
https://repo.qst.go.jp/records/79813b6780d4d-29f8-4aaf-9e10-8e944ef0dee8
| Item type | 学術雑誌論文 / Journal Article(1) | |||||
|---|---|---|---|---|---|---|
| 公開日 | 2020-03-30 | |||||
| タイトル | ||||||
| タイトル | Draft genome sequence of calcium-dependent Novosphingobium sp. strain TCA1, isolated from a hot spring containing a high concentration of calcium ions | |||||
| 言語 | ||||||
| 言語 | eng | |||||
| 資源タイプ | ||||||
| 資源タイプ識別子 | http://purl.org/coar/resource_type/c_6501 | |||||
| 資源タイプ | journal article | |||||
| アクセス権 | ||||||
| アクセス権 | metadata only access | |||||
| アクセス権URI | http://purl.org/coar/access_right/c_14cb | |||||
| 著者 |
Fujinami, Shun
× Fujinami, Shun× Sato, Katsuya× Narumi, Issay× Ito, Masahiro× Sato, Katsuya |
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| 抄録 | ||||||
| 内容記述タイプ | Abstract | |||||
| 内容記述 | Calcium-dependent Novosphingobium sp. strain TCA1 was newly isolated from a water sample of a hot spring containing a high concentration of calcium ions. Here, we report the draft genome sequence of this bacterium, which may be the basis for the research of calcium ion homeostasis. This bacterium was isolated from a water sample of Tsurumaki-onsen which is well known as a Japanese hot spring containing a high concentration of calcium ions. For sequencing, a library was constructed using the Nextera DNA library prep kit, with an insert length of approximately 300 bp; the library was then subjected to 100-bp paired-end sequencing on the Illumina HiSEQ2500 2x100-bp module. Consequently, the draft genome sequence of Novosphingobium sp. TCA1 was 6,173,804 bp with 64.3% GC content in total length and comprised of 136 large contigs (>500 bp), which was assembled by SPAdes v. 3.12.0. The draft genome sequence was predicted a total of 5,649 protein-coding genes and 53 tRNAs. |
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| 書誌情報 |
Microbiology Resource Announcements 巻 9, 号 15, 発行日 2020-06 |
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| ISSN | ||||||
| 収録物識別子タイプ | ISSN | |||||
| 収録物識別子 | 2576-098X | |||||
| DOI | ||||||
| 識別子タイプ | DOI | |||||
| 関連識別子 | 10.1128/MRA.00145-20 | |||||
| 関連サイト | ||||||
| 識別子タイプ | URI | |||||
| 関連識別子 | https://mra.asm.org/content/9/15/e00145-20 | |||||
